species:   Drmel
pid:       MI0011580
parent:    dme-mir-2491
paralog:   
locus:     NC_004354.4:22833440-22833583
matures:   ['CGCUGUUGCCUUUGCAGUUGCU', 'CAGCAGCAACUGCAGUAGCAGC']
srr:       SRR11906543
genome:    /Users/jax/+Genomes/Animal_genomes/Drmel.GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram NC_004354.4:22833440-22833583

0 out of bounds
2 alignments
2 proper strand
2 stranded perfect matches

               ***********************                                                                ***********************                   
CGCGAACCACUUUGUGCCGCUGUUGCCUUUGCAGUUGCUGUUUUCCAUGUUGCUACUGCGGCCAAUUGUUGCGCAUCAGCAACAUCAACAACAUCAACAACAGCAGCAGCAACUGCAGUAGCAGCACUCGUGAUUCACUUUCGA
.(.(((.(((...((((.((((((((..((((.(((((((((....((((((((..((((...........))))..)))))))).............))))))))).))))..)))))))).))))..))).))).)......
-----------------CGCUGUUGCCUUUGCAGUUGCU--------------------------------------------------------------------------------------------------------- l=22 a=0 c
-------------------------------------------------------------------------------------------------------CAGCAGCAACUGCAGUAGCAGC------------------- l=22 a=0 c*
-----------------CGCUGUUGCCUUUGCAGUUGC---------------------------------------------------------------------------------------------------------- l=21 a=2 ma
--------------------------------------------------------------------------------------------------------AGCAGCAACUGCAGUAGCAGC------------------- l=21 a=0 ma*

-----------------CGCUGUUGCCUUUGCAGUUGC---------------------------------------------------------------------------------------------------------- l=21 a=2 (ma)

mb-01011
ax-1011111
ku-01
ss-111111111110
fn-011
